1. 1. Click species of interest in classification system that consist hierarchical structure by NCBI taxonomy tree
  2. 2. User can search species of interest directly by using ‘search panel’ and ‘search panel’ supports auto completion of species name for user-convenience.
  3. 3. Below the figure, it is example for searching ‘Saccharomyces cerevisiae’. In case by search function, you would show all species to include the typing word.
  4. 4. Representative genome information for ‘Saccharomyces cerevisiae’ are presented with assembly, taxonomy and GenBank information.
  5. 5. Users can access detailed information of genome by clicking ‘Genome Browser’ button.
  6. 6. In ‘Genome Browser’, structural information of genome is presented by circular form with zoom in/out functions ranging from 100% to 1,000%.
  7. 7. Version of genome could be chosen by database source such as NCBI-Refseq, Ensembl and others. In some case, it can’t show genome because the data is not supported by the database source.
  8. 8. To download sequence files, users click three icons of ‘Genome’, ‘CDS’ and ‘PEP’.
  9. 9. A gene search function by position or gene name. Type a gene name in entry of ‘Query’ and then click button of ‘Search’. The gene name is completed automatically if it exist in genome.
  10. 10. The page indicates to flaking region of gene for users’ search. Additionally, if users want to investigate detailed information for the gene, you could select the gene (“SAF1”). Then, it moves a page of “Gene Viewer”.
  11. 11. ‘Gene Viewer’ provides detailed information of genes.
  12. 12. In ‘Gene Information’ panel, locus tag, species name, annotation version and taxonomy information are presented.
  13. 13. In ‘Gene Structure’ panel, general information about gene structures are provided by various tracks such as gene, mRNA, exon, CDS, ncRNA, repeat region, tRNA and rRNA. Also, you download the sequence of peptide and CDS.
  14. 14. In ‘Domain Architecture’ panel, domain architectures of genes are provided using IPR terms from pre-performed InterProScan v5.0. The domain information of individual databases such as Pfam, Gene3D, ProSiteProfiles and PANTHER are shown.
  15. 15. In ‘Subcellular localization’ panel, subcellular localization information predicted from three analysis programs such as TMHMM, MultiLoc2, and TargetP are shown. Detailed information is presented in each subpanels.
  16. 16. In ‘Ortholog or Paralog information’ panel, ortholog genes of closed-relative species and paralog genes are presented from OrthoMCL analysis. Users can obtain the information of organism, assembly ID and protein ID for candidate orthologs.